PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906739.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1062aa    MW: 118655 Da    PI: 7.8541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906739.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-09221241425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++Cr+fa+ G C++G++CkF H
  XP_010906739.1 221 PPCRDFAA-GRCRRGSQCKFLH 241
                     79******.************* PP

2zf-CCCH17.57.1e-06313336226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      te+C +f + G C++G++C++ H 
  XP_010906739.1 313 STERCYDFTK-GRCHRGSSCRYVHH 336
                     59********.*************7 PP

3zf-CCCH25.42.5e-08377396525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++fa+ G C++G+ CkF+H
  XP_010906739.1 377 PCKYFAE-GRCRRGEDCKFSH 396
                     8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.8E-6217243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403217244IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6221241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5222243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934311338IPR000571Zinc finger, CCCH-type
SMARTSM003560.027311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591372399IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5372398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6375397IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6377396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5377397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA  60
ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH  120
WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR  180
CSELCRSRSR SRSRSRSPYG LNRGPERWAD RGRIGAGKLA PPCRDFAAGR CRRGSQCKFL  240
HEDGGRRHSG RNYETDLREN RYEKQRYSGQ DKENYADSWE QSDYARNKLS PRHGSQYDEG  300
DCVKLELHKS NKSTERCYDF TKGRCHRGSS CRYVHHEVSS HGGWSTRDEA REKTYDRRDL  360
NASLGGRIES RRVSDTPCKY FAEGRCRRGE DCKFSHQDVP HEHLEGRPGD NSMIYNLGIG  420
DGSSRISSNW SDQTTAINVT NSSQWISNDG AGIAVPQSVD RVDSGQKPQY SQSQNPEGGN  480
CQIVAQEASQ KASTSQEEKI TEENSGQHQI PTVSAQQTAD RAYSIKDEMF SCEKNGTTVA  540
SNARPQAEMN SASNLSTVVS IAGQSFSQDG QSQYMGPQPF HAQSFTPNAQ FQQIVPPLPF  600
SGQLQQLYPM TSNGQSQFRV HSALLNTQNF NLSMHNQPVH LGQNKQNYNP GGQTQQNLNL  660
PPPQTGQSQQ NFQVLQSLPP PQSGPSQQNF NLSGQIQYTV PPFSGQNQQN NSLNGQNHQS  720
LPPPQNGPSN QNVHLLAPDG QSQYATPQPA NALSFNSEEK SLQTSSENTG REGINQNTDE  780
SEKKSLPLCS DTPVAHKVVT SEQAARITDL SASLAQFFHN SGLPPSQLFP PSSVRPPANP  840
AAPFLQPSEG SWTQSHVPTS DIMQPIKSET GNLPSGFSSN STEQKDPKMV ETQTHLESMI  900
PVSVTDGTDG NPSKGVNLKE KQQHGNHNPM QVELSVDTAS KKVNEIETGQ IKKEQAAHLE  960
DLDADMRTDG ESKRSKEIKG IRLFKCSLVE YVKDILKPTW KEGHLSKEAH KTIVKKVVDK  1020
VTGAMQGPNI PQTQEKIDLY LLHSKTKLNR LVQAYVEKYV KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185195RSRSRSRSRSR
2187195RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906738.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_010906739.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_010906740.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein